Publications

Peer-Reviewed Publications

1. Castro-Pearson, S.*, Samorodnitsky, S.*, Yang, K.*, Lotfi-Emran, S., Ingraham, N. E., Bramante, C., ... & Tignanelli, C. J. (2023). Development of a proteomic signature associated with severe disease for patients with COVID-19 using data from 5 multicenter, randomized, controlled, and prospective studies. Scientific Reports, 13(1), 20315.

2. MacDonald, D. M., Samorodnitsky, S., Wendt, C. H., Baker, J. V., Collins, G., Kruk, M., Lock, E. F., Paredes, R., Poongulali, S., Weise, D. O., Winston, A., Wood, R., Kunisaki, K., \& INSIGHT START Pulmonary Substudy Group (2023). Pneumoproteins and biomarkers of inflammation and coagulation do not predict rapid lung function decline in people living with HIV. Scientific Reports, 13(1), 4749.

3. Samorodnitsky, S., Lock, E. F., Kruk, M., Morris, A., Leung, J. M., Kunisaki, K. M., ... & Wendt, C. H. (2023). Lung proteome and metabolome endotype in HIV-associated obstructive lung disease. ERJ Open Research, 9(2).

4. Wendt, C. H., Samorodnitsky, S., Lock, E. F., Kruk, M., Morris, A., Leung, J. M., Kunisaki, K. M., & Griffin, T. J. (2022). Lung and Plasma Metabolome in HIV-Associated Obstructive Lung Disease. JAIDS Journal of Acquired Immune Deficiency Syndromes, 91(3), 312-318.

5. Samorodnitsky, S., Hoadley, K. A., & Lock, E. F. (2022). A hierarchical spike-and-slab model for pan-cancer survival using pan-omic data. BMC bioinformatics, 23(1), 1-21.

6. Samorodnitsky, S., Hoadley, K. A., & Lock, E. F. (2020). A Pan-Cancer and Polygenic Bayesian Hierarchical Model for the Effect of Somatic Mutations on Survival. Cancer informatics, 19, 1176935120907399.

*Authors contributed equally.

Manuscripts Under Review

1. Samorodnitsky, S., Weise, D., Lock, E. F., Kunisaki, K. M., Morris, A., Leung, J., Griffin, T. J., Wendt, C. H. (2023) The lung proteome in HIV-associated obstructive lung disease (OLD). 

2. Samorodnitsky, S., Wendt, C. H., Lock, E. F. (2022) Bayesian Simultaneous Factorization and Prediction Using Multi-Omic Data. arXiv preprint arXiv:2211.16403

3. Samorodnitsky S., Masotti, M., Zilinskas, R., Neher, A., Gliddon, A., Gliddon, L., Shore, M., Eaton A., Brearley, A., Le, L. (2023) Leveraging a Community Partnership to Provide Statistical Consulting Experience to Graduate Student Trainees